Computer Assisted Total Knee Arthroplasty (CAS TKR) has been shown to provide excellent and reproducible limb mechanical alignment. CAS TKR has also been demonstrated to reduce limb alignment variance and outliers. Previous studies have shown improved mechanical alignment both radiographically and clinically. Specifically, CAS TKR has been shown to result in alignment deviations less than 3 degrees from neutral mechanical femoral and tibial axes. Furthermore, CAS TKR also permits any significant pre-operative tibial deformity to be quantified prior to performing tibial osteotomies. In this study, we describe the use of computer navigation to quantify the amount of bone loss on the medial or lateral tibial plateau and the subsequent use of this data to assess the need for augmentation with tibial wedges. Two hundred and thirty consecutive primary computer assisted total knee arthroplasties were performed by one senior surgeon (L.P.) at Northwestern Memorial Hospital. In all cases, the tibial deformity was quantified and recorded intraoperatively using computer navigation software. The deformity was recorded in the navigation software by inputting the lowest point on the deformed tibial plateau and the mid point on the non-deformed tibial plateau using navigation markers. After Institutional Review Board approval was obtained, a retrospective review of the patient operative reports and patient charts was performed. Operative reports were reviewed to identify cases with the difference between the values of medial and lateral tibial plateaus exceeded thirteen millimeters and cases when tibial augmentation was performed. In cases utilising medial or lateral tibial augmentation, pre operative and post operative anterior posterior and lateral knee radiographs and long leg standing anterior posterior radiographs were reviewed to measure the joint line restoration and final mechanical limb alignment. All two hundred and thirty operative dictations and patient charts were reviewed. In seven cases, the difference between the values of the medial and lateral tibial plateaus was greater than thirteen millimeters. In all seven cases, tibial augmentation was utilized in order to prevent resection of tibial bone in excess of fourteen millimeters. In cases with a difference of medial and lateral tibial plateau values of less than thirteen millimeters, no tibial augmentation was utilised. For the seven cases using tibial augmentation, preoperative and post-operative knee and long standing radiographs were reviewed to examine joint line restoration and final limb alignment. In all seven patients, joint line restoration was successful within 4 millimeters and long standing radiographs revealed excellent limb alignment. Computer Assisted Total Knee Arthroplasty has already been shown to provide excellent limb alignment and reduce variance and outliers. We demonstrate that Computer Assisted Total Knee Arthroplasty in patients with significant tibial deformities can help assess and the amount of bone loss on the medial or lateral tibial plateaus. Excessive tibial resection to restore the mechanical axis and joint line can be avoided by quantifying the amount of tibial bone loss prior to osteotomy. Thus, Computer Assisted Total Knee Arthroplasty can successfully restore the joint line and overall limb alignment with conservative bone resection in patients with significant pre-operative tibial deformities.